Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PRAD | rs12594303 | chr15:82521192 | C/T | 4.19E-10 | 482 | 29.52 | 35.77 | 29 | KM Plot |
| PRAD | rs12610881 | chr19:56097759 | C/T | 2.39E-5 | 486 | 31.4 | 27.48 | 22.37 | KM Plot |
| PRAD | rs12616232 | chr2:239080093 | C/T | 1.31E-8 | 486 | 31.38 | 28.6 | 31.68 | KM Plot |
| PRAD | rs12621791 | chr2:239104061 | G/A | 6.29E-10 | 480 | 31.43 | 28.93 | 30.45 | KM Plot |
| PRAD | rs12622112 | chr2:129055476 | G/A | 3.88E-5 | 472 | 31.28 | 29.1 | 31.43 | KM Plot |
| PRAD | rs12623230 | chr2:239092893 | C/T | 0 | 486 | 30.78 | 35.05 | 5.7 | KM Plot |
| PRAD | rs12652584 | chr5:150841972 | C/T | 8.5E-5 | 484 | 30.53 | 32.93 | 31.15 | KM Plot |
| PRAD | rs12660357 | chr6:3312135 | T/C | 0.000158 | 493 | 31.27 | 28.97 | 28.32 | KM Plot |
| PRAD | rs12676389 | chr8:20245189 | C/T | 3.2E-6 | 494 | 31.23 | 30.2 | NA | KM Plot |
| PRAD | rs12683355 | chr9:124279217 | G/A | 5.88E-6 | 475 | 30.93 | 31.32 | 24.95 | KM Plot |
| PRAD | rs12683986 | chr9:72878160 | C/T | 1.73E-5 | 493 | 30.8 | 31.35 | 22.45 | KM Plot |
| PRAD | rs12686312 | chr9:72944415 | G/A | 1.76E-5 | 491 | 30.87 | 31.4 | 22.45 | KM Plot |
| PRAD | rs12686584 | chr9:72833821 | C/T | 1.73E-5 | 493 | 30.8 | 31.35 | 22.45 | KM Plot |
| PRAD | rs12693133 | chr2:178792372 | T/C | 4.13E-5 | 494 | 30.77 | 31.93 | 20.48 | KM Plot |
| PRAD | rs12693143 | chr2:178798777 | C/T | 4.13E-5 | 494 | 30.77 | 31.93 | 20.48 | KM Plot |